Function reference • tidysq

All functions
`alphabet()`	Get alphabet of given sq object.
`as.character(<sq>)`	Convert sq object into character vector
`as.matrix(<sq>)`	Convert sq object into matrix
`as.sq()`	Convert an object to sq
`bite()`	Subset sequences from sq objects
`collapse()`	Collapse multiple sequences into one
`complement()`	Create complement sequence from dnasq or rnasq object
`==`(<sq>)	Compare sq objects
`export_sq()`	Export sq objects into other formats
`find_invalid_letters()`	Find elements which are not suitable for specified type.
`find_motifs()`	Find given motifs
`get_sq_lengths()`	Get lengths of sequences in sq object
`get_standard_alphabet()`	Get standard alphabet for given type.
`get_tidysq_options()`	Obtain current state of tidysq options
`%has%`	Test sq object for presence of given motifs
`import_sq()`	Import sq objects from other objects
`is.sq()` `is.sq_dna_bsc()` `is.sq_dna_ext()` `is.sq_dna()` `is.sq_rna_bsc()` `is.sq_rna_ext()` `is.sq_rna()` `is.sq_ami_bsc()` `is.sq_ami_ext()` `is.sq_ami()` `is.sq_unt()` `is.sq_atp()`	Check if object has specified type
`is_empty_sq()`	Test if sequence is empty
`paste(<sq>)`	Paste sequences in string-like fashion
`random_sq()`	Generate random sequences
`read_fasta()`	Read a FASTA file
`remove_ambiguous()`	Remove sequences that contain ambiguous elements
`remove_na()`	Remove sequences that contain NA values
`reverse()`	Reverse sequence
`sq-class`	sq: class for keeping biological sequences tidy
`sq()`	Construct sq object from character vector
`sq_type()` `sq_type<-`()	Get type of an sq object
`sqapply()`	Apply function to each sequence
`sqconcatenate`	Concatenate sq objects
`sqextract`	Extract parts of a sq object
`sqprint`	Print sq object
`substitute_letters()`	Substitute letters in a sequence
`tidysq-package`	tidysq: tidy analysis of biological sequences
`translate()`	Convert DNA or RNA into proteins using genetic code
`typify()`	Set type of an sq object
`write_fasta()`	Save sq to fasta file

Reference

All functions