Michał Burdukiewicz
📝 Bio
Hi! My name is Michał Burdukiewicz and I am passionate about bioinformatics and R.
I am currently leading the Laboratory of Bioinformatics and Multi-omics Analysis at the Medical University of Białystok. Contact me if you want to collaborate with us!
My current projects:
- AmyloGraph, a comprehensive database of amyloid-amyloid interactions (doi:10.1093/nar/gkac882).
- HaDeX, an integrated analytical tool for HDX-MS (maintainer Weronika Puchała).
- Negative data sampling, where we show that benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data (doi:10.1093/bib/bbac343).
I am also maintaining the list of machine learning models for prediction of peptide properties (see also our article on that).
I ❤️ R!
📱 Contact
🚀 Research stays
💻🧫 Experience
🎓 Education
University of Wrocław
Molecular biology
2015-10-01 - 2019-01-15PhD thesis: n-gram analysis of biological sequences 📍 Wrocław, Poland
University of Wrocław
Bioinformatics and systems biology
2011-10-01 - 2013-06-15
MSc thesis: Machine learning algorithms in prediction of signal peptides of heterokonts 📍 Wrocław, Poland
👏🏻 Conferences, workshops, training schools 🤝🏻
📖 Publications
🧑🏻🔬 Other activities
- Special issue guest editor (Analysis of Amplification Curve Data), Life
- Special issue guest editor (Cross-Interactions in Amyloid Aggregation), Frontiers in Molecular Biosciences.
- Reviewer (ACS Omega, Analytical Chemistry, Antibiotics, Bioinformatics, BMC Biology, Briefings in Bioinformatics, Computational and Structural Biotechnology Journal, FEBS Open Bio, Frontiers in Molecular Biosciences, International Journal of Molecular Sciences, Journal of Molecular Biology, Journal of Personalized Medicine, Journal of Statistical Software, Journal of Functional Biomaterials, Pharmaceutics, PLOS One, PLOS Computational Biology, Scientific Reports, Theory in Biosciences).
- Chair of the Organizing Committee (Wrocław Biofilm Symposium, 9-10 October 2017, Wrocław, Poland).
- Chair of the Organizing Committee (Why R? - Polish-German Conference of R Users, 2-5 July 2018, Wrocław, Poland).
- Member of the Scientific Committee (International Biotech Innovation Days, 23-25 May 2018, Senftenberg, Germany).
- Member of the Organizing Committee (Why R? - International Conference of R Users, 26-29 September 2020, Warsaw, Poland).
- Member of the Organizing Committee (Barcelona Protein Aggregation Training School, 12-16 September 2022, Barcelona).
- Member of the Organizing Committee (Iberian Prion Conference, 11-12 May 2023, Barcelona).
- Member of the Organizing Committee (Iberian Prion Conference, 23-24 May 2025, Santiago de Compostela).
- ML4NGP COST Action Management Committee Member.
- Secretary of the Board of the Genomics Platform at Warsaw University of Technology.
- Founder and board member of Why R? Foundation.
- Founder of Wrocław R User Group (STWUR).
- Founder of Student Bioinformatics Club (University of Wrocław).