People behind the science

Meet the BioGenies team: researchers working across bioinformatics, multiomics and machine learning. Explore their academic CVs, publications and collaborations.

Different backgrounds. Shared curiosity. We bring together biological questions, computational thinking and a collaborative spirit.

Meet our collaborators · Explore our research

Damian Wilary

Medical University of Białystok

Medical University of Białystok logo

A group in motion

Conferences, workshops and research stays connect our team and collaborators across institutions and borders. This overview summarises the activities recorded in our academic CVs.

21 Countries in our records
90 Conference & workshop editions
28 Research stays
Belgium Canada Cyprus Czech Republic Denmark France Germany Greece Hungary Italy Japan Lithuania Mexico Netherlands Poland Portugal Slovakia Spain Switzerland United Kingdom USA

Meeting the research community

One card per event edition, with everyone who attended listed together. Includes current and former members and collaborators.

2026-09-16 – 2026-09-18

Symposium of the Polish Bioinformatics Society

Poznań, Poland
Attended by Michał Burdukiewicz Valentín Iglesias Krystyna (Krysia) Grzesiak Mariia Rutkowska
Talks, posters & participation (4)
  • Michał Burdukiewicz · Talk

    European AI Act and biomedical data: more paperwork or more governance?

  • Valentín Iglesias · Talk

    The AmyloGraph amyloid-antibody database: data acquisition, curation, extraction for amyloid-antibody interactions

  • Krystyna (Krysia) Grzesiak · Talk

    Iscores: proper scoring rules for evaluating missing-value imputation methods

  • Mariia Rutkowska · Talk

    TickPacket

2026-02-17 – 2026-02-20

Non-globular proteins in the era of Machine Learning Training School

Seville, Spain
Attended by Jarosław (Jarek) Chilimoniuk Julia Szkóp
Talks, posters & participation (2)
  • Jarosław (Jarek) Chilimoniuk · Training

    Introduction to Machine learning for Non-globular proteins

  • Julia Szkóp · Training

    Introduction to Machine learning for Non-globular proteins

Event

2025-09-24 – 2025-09-26

Functional Amyloid Meeting

Hamburg, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Aggregating amyloid resources

Earlier events (87)
2025 4

2025-09-15 – 2025-09-17

Symposium of the Polish Bioinformatics Society

Białystok, Poland
Attended by Michał Burdukiewicz Jarosław (Jarek) Chilimoniuk Valentín Iglesias Mariia Rutkowska Joanna (Asia) Pokora
Talks, posters & participation (5)
  • Michał Burdukiewicz · Talk

    DeepSkim: Towards Automated Assessment of Publication Content

  • Jarosław (Jarek) Chilimoniuk · Poster

    Aggregating amyloid resources: comprehensive list of amyloid-like aggregation databases

  • Valentín Iglesias · Talk

    A4D Antibody Aggregation Database (A4D-ABDB): identifying and optimizing aggregation propensity for ttherapeutic antibodies

  • Mariia Rutkowska · Poster

    Development of AmyloGraph Antibody database

  • Joanna (Asia) Pokora · Poster

    MetaboCrates: An open-source pipeline for quality-aware analysis of targeted metabolomics data

Event

2025-09-15 – 2025-09-21

Konferencja Zastosowań Matematyki

Kościelisko, Poland
Attended by Krystyna (Krysia) Grzesiak
Talks, posters & participation (1)
  • Krystyna (Krysia) Grzesiak · Poster

    imputomics: how to impute metabolomics data

2025-06-22 – 2025-06-26

Metabolomics

Prague, Czech Republic
Attended by Michał Burdukiewicz Krystyna (Krysia) Grzesiak Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (3)
  • Michał Burdukiewicz · Poster

    MetaboCrates: An open-source pipeline for quality-aware analysis of targeted metabolomics data

  • Krystyna (Krysia) Grzesiak · Poster

    Leveraging SLOPE Regularization for Variable Clustering in Metabolomics

  • Jarosław (Jarek) Chilimoniuk · Poster

    imputomics evolved: expanding imputation methods and redesigning benchmarks for missing data imputation

2025-05-20 – 2025-05-23

Meeting on Non-globular proteins in the era of Machine Learning

Vilnius, Lithuania
Attended by Jarosław (Jarek) Chilimoniuk Valentín Iglesias Mariia Rutkowska Michał Burdukiewicz Oriol Bárcenas
Talks, posters & participation (5)
  • Jarosław (Jarek) Chilimoniuk · Poster

    Aggregating amyloid resources

  • Valentín Iglesias · Poster

    Liquid-liquid phase separation (LLPS) as a sensing and adaptation mechanism: An evidence-based hypothesis on AP2 transcription factors in the malaria parasite

  • Mariia Rutkowska · Poster

    Development of AmyloGraph Antibody database

  • Michał Burdukiewicz · Poster

    Comprehensive protein datasets and benchmarking for liquid-liquid phase separation

  • Oriol Bárcenas · Talk

    StriFi: Comprehensive database of Fibril Structures

2024 5

2024-10-20 – 2024-10-24

Human Proteome Organisation World Congress

Dresden, Germany
Attended by Weronika Puchała Jarosław (Jarek) Chilimoniuk Krystyna (Krysia) Grzesiak Oriol Bárcenas Michał Burdukiewicz
Talks, posters & participation (5)
  • Weronika Puchała · Poster

    hadexversum: tools for HDX-MS analysis

  • Jarosław (Jarek) Chilimoniuk · Poster

    imputomics 2.0: bridging data gaps in proteomics with missing value imputation algorithms and their benchmark

  • Krystyna (Krysia) Grzesiak · Poster

    Feature screening and model regularization for k-mer representations of biological sequences

  • Oriol Bárcenas · Poster

    Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation

  • Michał Burdukiewicz · Poster

    Confident protein datasets for liquid-liquid phase separation studies

2024-09-11 – 2024-09-13

Symposium of the Polish Bioinformatics Society

Warsaw, Poland
Attended by Michał Burdukiewicz Jarosław (Jarek) Chilimoniuk Weronika Puchała Krystyna (Krysia) Grzesiak Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (5)
  • Michał Burdukiewicz · Poster

    Confident datasets of client, driver and negative proteins in liquid-liquid phase separation

  • Jarosław (Jarek) Chilimoniuk · Poster

    imputomics 2.0: comprehensive R package for missing data imputation in proteomics data

  • Weronika Puchała · Poster

    hadexversum: HDX-MS analysis made easy

  • Krystyna (Krysia) Grzesiak · Poster

    Feature screening and model regularization for k-mer representations of biological sequences

  • Katarzyna (Kasia) Sidorczuk · Talk

    Strain-resolved metagenomics in analysis of gut microbiota dynamics within families

2024-07-12 – 2024-07-16

Intelligent Systems For Molecular Biology

Montreal, Canada
Attended by Krystyna (Krysia) Grzesiak Weronika Puchała
Talks, posters & participation (2)
  • Krystyna (Krysia) Grzesiak · Poster

    imputomics: web server and R package for missing values imputation in metabolomics data

  • Weronika Puchała · Poster

    hadexversum: the family of HDX-MS tools

2024-06-16 – 2024-06-20

Metabolomics

Osaka, Japan
Attended by Krystyna (Krysia) Grzesiak
Talks, posters & participation (1)
  • Krystyna (Krysia) Grzesiak · Poster

    Imputomics: Simplifying Metabolomics Data Imputation with All-in-One Access

2024-05-14 – 2024-05-17

Meeting on Non-globular proteins in the era of Machine Learning

Thessaloniki, Greece
Attended by Jarosław (Jarek) Chilimoniuk Michał Burdukiewicz Valentín Iglesias
Talks, posters & participation (3)
  • Jarosław (Jarek) Chilimoniuk · Poster

    imputomics 2.0: comprehensive R package for missing data imputation in proteomics data

  • Michał Burdukiewicz · Poster

    Confident dataset generation for the specific prediction and benchmarking of client, driver and negative proteins in liquid-liquid phase separation

  • Valentín Iglesias · Poster

    A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.

2023 7
SCB

2023-12-15 – 2023-12-16

Symposium of Bioinformatics and Genomics

Barcelona, Spain
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Talk

    A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.

PhasAge

2023-10-18 – 2023-10-20

PhasAGE international conference

Porto, Portugal
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Poster

    A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.

IBID

2023-10-17 – 2023-10-19

International Biotech Innovation Days

Senftenberg, Germany
Attended by Jarosław (Jarek) Chilimoniuk Michał Burdukiewicz
Talks, posters & participation (2)
  • Jarosław (Jarek) Chilimoniuk · Talk

    Imputomics: comprehensive R package for missing data imputation in metabolomics data

  • Michał Burdukiewicz · Keynote

    AmyloGraph: mapping the landscape of amyloid-amyloid interactions

CASUS

2023-10-11

Center for Advanced Systems Understanding workshops

Wrocław, Poland
Attended by Krystyna (Krysia) Grzesiak
Talks, posters & participation (1)
  • Krystyna (Krysia) Grzesiak · Talk

    Imputomics: comprehensive missing value imputation for metabolomics data

2023-07-05 – 2023-07-07

Meeting on Non-globular proteins in the era of Machine Learning

Bratislava, Slovakia
Attended by Valentín Iglesias Michał Burdukiewicz
Talks, posters & participation (2)
  • Valentín Iglesias · Talk

    Incorporating protein microenvironmental influence on protein compaction prediction.

  • Michał Burdukiewicz · Talk

    AmyloGraph: A comprehensive database of amyloid-amyloid interactions

PhasAge

2023-04-17 – 2023-04-21

PhasAGE training school

Porto, Portugal
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Training

    Protein aggregation, intrinsic disorder and phase separation in the era of machine learning

MetCircle

2023-01-27 – 2023-01-28

Metabolomics Circle

Wrocław, Poland
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Talk

    Imputomics: imputation of missing values for ‘omics’ dat

2022 10

2022-12-04 – 2022-12-08

Human Proteome Organisation World Congress

Cancún, Mexico
Attended by Weronika Puchała
Talks, posters & participation (1)
  • Weronika Puchała · Poster
DAaC

2022-11-24

Hasso Plattner Institute, University of Potsdam

Potsdam, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Sampling of negative datasets

CBaB

2022-11-16

Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw

Warsaw, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    The impact of negative data sampling on antimicrobial peptide prediction

ARgs

2022-11-11

Institute of Biotechnology, Vilnius University

Vilnius, Lithuania
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Pitfalls of machine learning for peptide analysis

Ptas

2022-10-27

Faculty of Mathematics and Computer Science, University of Wrocław

Wrocław, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Pułapki w analizie danych peptydowych

CASUS

2022-10-06 – 2022-10-07

Center for Advanced Systems Understanding workshops

Wrocław, Poland
Attended by Krystyna (Krysia) Grzesiak
Talks, posters & participation (1)
  • Krystyna (Krysia) Grzesiak · Talk

    A novel semiparametric model for hydrogen deuterium exchange monitored by mass spectrometry data

ECCB

2022-09-18 – 2022-09-21

European Conference on Computational Biology

Sitges, Spain
Attended by Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (1)
  • Katarzyna (Kasia) Sidorczuk ·

    Where do they come from, where do they go? Prediction of protein subplastid localization and origin with PlastoGram

ESCS

2022-09-18

European Student Council Symposium

Sitges, Spain
Attended by Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (1)
  • Katarzyna (Kasia) Sidorczuk ·

    Where do they come from, where do they go? Prediction of protein subplastid localization and origin with PlastoGram

GCB

2022-09-06 – 2022-09-08

German Conference on Bioinformatics

Halle (Salle), Germany
Attended by Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (1)
  • Katarzyna (Kasia) Sidorczuk ·

    Where do they come from, where do they go? PlastoGram: a stacked model for prediction of protein subplastid localization and origin

CASUSCON

2022-07-11 – 2022-07-15

UWr-HZDR-CASUS International Conference on Advanced Systems Research CASUSCON

Wrocław, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Differentation anticancer from antimicrobial pepides using Cancergram

2021 4
EYSF

2021-10-21 – 2021-10-22

EMBO Young Scientists' Forum (EYSF)

Warsaw, Poland
Attended by Michał Burdukiewicz Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (2)
  • Michał Burdukiewicz · Poster

    The impact of negative data sampling on antimicrobial peptides prediction

  • Katarzyna (Kasia) Sidorczuk · Poster

    CancerGram: How to differentiate anticancer from antimicrobial peptides?

GCB

2021-09-06 – 2021-09-09

German Conference on Bioinformatics

online, Online
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    The impact of negative data sampling on antimicrobial peptide prediction

PCBBE

2021-05-19 – 2021-05-21

Polish Conference on Biocybernetics and Biomedical Engineering

Warsaw, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Negative data set sampling as the source of bias in prediction of antimicrobial peptides

GfV

2021-03-24 – 2021-03-26

Meeting of the Society for Virology

online, Online
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    AntiViroGram - proteome-wide prediction of antiviral peptide precursors

2020 4
IBID

2020-10-28 – 2020-10-29

International Biotech Innovation Days

Senftenberg, Germany
Attended by Jarosław (Jarek) Chilimoniuk Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (2)
  • Jarosław (Jarek) Chilimoniuk · Talk

    countfitteR: count data analysis for precision medicine

  • Katarzyna (Kasia) Sidorczuk · Poster

    Prediction of antimicrobial peptides with AmpGram

DSS

2020-10-16

Data Science Summit

Warsaw, Poland
Attended by Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (1)
  • Katarzyna (Kasia) Sidorczuk ·

    Reproducible analytic workflows in R with drake and renv

2020-09-24 – 2020-09-27

Why R? Conference

Warszawa, Poland
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Talk

    Count data analysis with countfitteR

DGHM & VAAM

2020-03-08 – 2020-03-11

Joint Microbiology & Infection Conference of the German Society for Hygiene and Microbiology and the Association of General and Applied Microbiology

Leipzig, Germany
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Poster

    AmpGram – a novel tool for prediction of antimicrobial peptides

2019 13
SSP

2019-11-03 – 2019-11-06

Symposium on Structural Proteomics

Göttingen, Germany
Attended by Weronika Puchała
Talks, posters & participation (1)
  • Weronika Puchała · Poster

    HaDeX: tool for analysis of HDX-MS data

SSP

2019-11-03 – 2019-11-06

Symposium on Structural Proteomics

Gottingen, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Just give me a p-value: statistical analysis of deuterium uptake curves in HDX-MS

2019-09-26 – 2019-09-29

Why R? Conference

Warszawa, Poland
Attended by Weronika Puchała Katarzyna (Kasia) Sidorczuk Jarosław (Jarek) Chilimoniuk Dominik Rafacz
Talks, posters & participation (4)
  • Weronika Puchała · Talk

    R for experimentalists: HDX-MS example

  • Katarzyna (Kasia) Sidorczuk · Talk

    PepBay: Implementation of Bayesian inference in the analysis of peptide arrays

  • Jarosław (Jarek) Chilimoniuk · Talk

    AmyloGram: the R package and a Shiny server for amyloid prediction

  • Dominik Rafacz · Talk

    AmyloGram 2.0: MBO in the prediction of amyloid proteins

2019-09-19 – 2019-09-21

Symposium of the Polish Bioinformatics Society

Cracow, Poland
Attended by Dominik Rafacz Michał Burdukiewicz Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (4)
  • Dominik Rafacz · Poster

    AmyloGram 2.0: MBO in the prediction of amyloid proteins

  • Dominik Rafacz · Talk

    AmyloGram 2.0: MBO in the prediction of amyloid proteins

  • Michał Burdukiewicz · Talk

    Did the targeting signals for mitochondria and plastids evolve from antimicrobial peptides?

  • Katarzyna (Kasia) Sidorczuk ·

    In silico identification and phylogeny of components responsible for protein import into thylakoids of Paulinella photosynthetic species

2019-09-19 – 2019-09-21

Symposium of the Polish Bioinformatics Society

Krakow, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments

GCB

2019-09-17 – 2019-09-19

German Conference on Bioinformatics

Heidelberg, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    autobiogramML: towards automated machine learning in protein function prediction

IMSS

2019-09-15 – 2019-09-20

International Mass Spectrometry School

Sitges, Spain
Attended by Weronika Puchała
Talks, posters & participation (2)
  • Weronika Puchała · Poster

    HaDeX - web-server for analysis of data from hydrogen-deuterium exchange-mass spectrometry experiments

  • Weronika Puchała · Talk

    HaDeX - web-server for analysis of data from hydrogen-deuterium exchange-mass spectrometry experiments

EMBO | EMBL

2019-09-11 – 2019-09-13

Symposium: Multiomics to Mechanisms - Challenges in Data Integration

Heidelberg, Germany
Attended by Weronika Puchała
Talks, posters & participation (1)
  • Weronika Puchała · Poster

    Analysis of data from hydrogen-deuterium exchange mass spectrometry experiments

2019-07-21 – 2019-07-25

Intelligent Systems For Molecular Biology and the European Conference on Computational Biology

Basel, Switzerland
Attended by Weronika Puchała
Talks, posters & participation (1)
  • Weronika Puchała · Poster

    HaDeX - analysis of data from hydrogen-deuterium exchange-mass spectrometry experiments

SMBE

2019-07-21 – 2019-07-25

Meeting of the Society for Molecular Biology and Evolution

Manchester, United Kingdom
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Did the targeting signals for mitochondria and plastids evolve from ancient antimicrobial peptides?

SatRday

2019-05-17 – 2019-05-18

Conference for users of the R Language

Gdańsk, Poland
Attended by Weronika Puchała Katarzyna (Kasia) Sidorczuk Jarosław (Jarek) Chilimoniuk Dominik Rafacz Michał Burdukiewicz
Talks, posters & participation (5)
  • Weronika Puchała · Talk

    HaDeX - analysis of HDX-MS data

  • Katarzyna (Kasia) Sidorczuk · Talk

    Bayesian inference in big data analysis

  • Jarosław (Jarek) Chilimoniuk · Talk

    AmyloGram: prediction of amyloid sequences in R

  • Dominik Rafacz · Talk

    drake: reproducible workflow management in R

  • Michał Burdukiewicz · Talk

    predPCR: an automated classification of qPCR curves

EuPA

2019-03-24 – 2019-03-28

Congress of the European Proteomic Association

Potsdam, Germany
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Poster

    AmyloGram: prediction of amyloid sequences in R

VAAM

2019-03-17 – 2019-03-19

Conference of the Association for General and Applied Microbiology

Mainz, Germany
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Poster

    Co-evolution of curli components CsgA and CsgB

2018 10
PL in ML

2018-12-14 – 2018-12-17

Polish View on Machine Learning

Warsaw, Poland
Attended by Katarzyna (Kasia) Sidorczuk Jarosław (Jarek) Chilimoniuk Michał Burdukiewicz
Talks, posters & participation (4)
  • Katarzyna (Kasia) Sidorczuk · Poster

    PepBay: a Bayesian framework for analysis of peptide arrays

  • Jarosław (Jarek) Chilimoniuk · Poster

    AmyloGram: prediction of amyloid sequences in R

  • Michał Burdukiewicz · Poster

    PCRedux: machine learning helper tool for sigmoid curves

  • Michał Burdukiewicz · Poster

    PCRedux: machine learning helper tool for sigmoid curves

ASM

2018-10-07 – 2018-10-11

American Society for Microbiology Conference on Biofilms

Washington DC, USA
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Poster

    CsgA, CsgB and CsgC - evolutionary Interplay in curli biogenesis

NGP-Net

2018-09-12 – 2018-09-14

NGP-Net Symposium on non-globular proteins

Druskininkai, Lithuania
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Talk

    Evaluation of mutational impact on prion-like proteins aggregation propensity.

2018-09-05 – 2018-09-07

Symposium of the Polish Bioinformatics Society

Wrocław, Poland
Attended by Jarosław (Jarek) Chilimoniuk Michał Burdukiewicz Katarzyna (Kasia) Sidorczuk
Talks, posters & participation (3)
  • Jarosław (Jarek) Chilimoniuk · Talk

    PhyMet2: a database and toolkit for phylogenetic and metabolic analyses of methanogens

  • Michał Burdukiewicz · Talk

    predPCR: automated classification of sigmoid curves

  • Katarzyna (Kasia) Sidorczuk · Poster

    Two protein import pathways into the cyanobacteria-derived, photosynthetic organelles of Paulinella chromatophora

IBID

2018-05-23 – 2018-05-25

International Biotech Innovation Days

Senftenberg, Germany
Attended by Jarosław (Jarek) Chilimoniuk Katarzyna (Kasia) Sidorczuk Michał Burdukiewicz
Talks, posters & participation (3)
  • Jarosław (Jarek) Chilimoniuk · Poster

    PhyMet2: database and algorithm predicting culturing conditions of methanogens

  • Katarzyna (Kasia) Sidorczuk · Poster

    Protein import into the chromatophores of Paulinella photosynthetic species

  • Michał Burdukiewicz · Workshops

    Introduction to basic R

MRCL

2018-05-01

University of Michigan

Michigan, USA
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Amyloid stretches in proteinous scaffolds of biofilms

VAAM

2018-04-15 – 2018-04-18

Conference of the Association for General and Applied Microbiology

Wolfsburg, Germany
Attended by Jarosław (Jarek) Chilimoniuk
Talks, posters & participation (1)
  • Jarosław (Jarek) Chilimoniuk · Poster

    PhyMet2: complex database containing records on methanogens with unique feature (MethanoGram) allowing prediction of culture conditions based on 16S rRNA

NGP-Net

2018-04-09 – 2018-04-12

NGP-Net Symposium on non-globular proteins

Budapest, Hungary
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Training
SiL

2018-01-24

Interdisciplinary Nanoscience Center & Department of Molecular Biology and Genetics, Aarhus University

Aarhus, Denmark
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Challenges in the computational prediction of peptide amyloidogenicity

NGP-Net

2018-01-09 – 2018-01-12

NGP-Net Winter School on non-globular proteins

Nicossia, Cyprus
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Training
2017 7
SCB

2017-12-20

Symposium of Bioinformatics and Genomics

Barcelona, Spain
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Poster

    AMYCO: Evaluation of mutational impact on prion-like proteins aggregation propensity.

WBS

2017-10-09 – 2017-10-10

Wrocław Biofilm Symposium

Wrocław, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    Predicting properties of biological sequences using n-gram analysis

NGP-Net

2017-08-28 – 2017-09-01

NGP-Net Symposium on non-globular proteins

Košice, Slovakia
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    Challenges in the computational prediction of peptide amyloidogenicity

2017-07-21 – 2017-07-25

Intelligent Systems For Molecular Biology and the European Conference on Computational Biology

Prague, Czech Republic
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Computational and experimental validation of amyloid databases

useR!

2017-07-04 – 2017-07-07

useR!

Brussels, Belgium
Attended by Michał Burdukiewicz
Talks, posters & participation (2)
  • Michał Burdukiewicz · Poster

    AmyloGram: prediction of amyloid sequences in R

  • Michał Burdukiewicz · Poster

    Integrated analysis of digital PCR experiments in R

IA„A

2017-05-25

Brandenburg University of Technology Cottbus-Senftenberg

Senftenberg, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Modelling amyloidogenic scaffolds of biofilms

qPCR dPCR & NGS

2017-04-03 – 2017-04-05

qPCR dPCR & NGS

Freising, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    dpcReport: web server and software suite for unified analysis of digital PCRs and digital assays

2016 12
SCB

2016-12-20

Symposium of Bioinformatics and Genomics

Barcelona, Spain
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Poster

    PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores.

eRum

2016-10-12 – 2016-10-14

European R Users Meeting

Poznań, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    N-gram analysis of biological sequences in R

2016-09-28 – 2016-09-30

Symposium of the Polish Bioinformatics Society

Białystok, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    SignalHsmm: prediction of malarial signal peptides

BIO

2016-09-13 – 2016-09-16

Congress of the Polish Biochemistry, Cell Biology, Biophysics and Bioinformatics

Wrocław, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    AmyloGram: analysis and prediction of amyloids using n-grams

GCB

2016-09-12 – 2016-09-15

German Conference on Bioinformatics

Berlin, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    Prediction of malarial signal peptides

ECCB

2016-09-03 – 2016-09-07

European Conference on Computational Biology

Hague, Netherlands
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    AmyloGram: a novel predictor of amyloidogenicity

ESCS

2016-09-03

European Student Council Symposium

Hague, Netherlands
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    AmyloGram: a novel predictor of amyloidogenicity

CHARME

2016-06-21 – 2016-06-22

CHARME of standardisation in life sciences

Warsaw, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Biogram: standardization of biological n-gram analysis in R

BIT

2016-06-16 – 2016-06-18

BioInformatics in Toruń

Toruń, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    AmyloGram: n-gram analysis of amyloids

IBID

2016-06-01 – 2016-06-02

Innovation Forum Senftenberg

Senftenberg, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (2)
  • Michał Burdukiewicz · Poster

    dpcR: web server and R package for analysis of digital PCR experiments

  • Michał Burdukiewicz · Talk

    biogram: a toolkit for biological n-gram analysis

NGP-Net

2016-02-15 – 2016-02-19

NGP-Net Winter School on non-globular proteins

Brixen, Italy
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Training
BIFI

2016-02-01 – 2016-02-03

International Conference BIFI 2016 on Molecular Recognition

Zaragoza, Spain
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Talk

    PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores.

2015 5
Potsdam Days

2015-11-01 – 2015-11-02

Potsdam Days on Bioanalysis

Potsdam, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    dpcReport -- Mobile-Health analysis framework

GCB

2015-09-27 – 2015-09-30

German Conference on Bioinformatics

Dortmund, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    N-gram analysis of amyloid data

2015-09-17 – 2015-09-19

Symposium of the Polish Bioinformatics Society

Lublin, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    biogram: a toolkit for n-gram analysis

RECOMB

2015-04-12 – 2015-04-15

International Conference on Research in Computational Molecular Biology

Warsaw, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Predicting eukaryotic signal peptides using hidden Markov models

qPCR dPCR & NGS

2015-03-23 – 2015-03-27

qPCR dPCR & NGS

Freising-Weihenstephan, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (2)
  • Michał Burdukiewicz · Poster

    The dpcR Package – a Framework for Analysis and Visualization of Digital PCR Experiments

  • Michał Burdukiewicz · Poster

    Methods of Comparing Digital PCR Experiments

2014 4
IMB - Seminar

2014-10-09

Technical University Dresden

Dresden, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Keynote

    Prediction of eukaryotic signal peptides using hidden semi-Markov models

DGHM & VAAM

2014-10-05 – 2014-10-08

Joint Microbiology & Infection Conference of the German Society for Hygiene and Microbiology and the Association of General and Applied Microbiology

Dresden, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    Prevalence of Shiga toxin-producing, enterohemorrhagic and enteropathogenic Escherichia coli – a systematic review

BIO

2014-09-09 – 2014-09-12

Congress of the Polish Biochemistry, Cell Biology, Biophysics and Bioinformatics

Warsaw, Poland
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Talk

    Signal peptide prediction using hidden Markov models

qPCR dPCR & NGS

2014-09-09 – 2014-09-10

qPCR dPCR & NGS

Lyon, France
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Poster

    dpcR: an R package for the analysis of digital PCR

Undated 2
Event

ongoing

BioHackaton

Berlin, Germany
Attended by Michał Burdukiewicz
Talks, posters & participation (1)
  • Michał Burdukiewicz · Workshops
Event

ongoing

4th BioHackaton

Wals, Germany
Attended by Valentín Iglesias
Talks, posters & participation (1)
  • Valentín Iglesias · Workshops

    Data Extraction and Annotation of Amyloid-Antibody Interactions: What We Built, What We Broke, Where We Stand, and What We’ve Learned

Research stays & exchanges

2024-11-12 – 2025-07-11

Medical University of Białystok

Mariia Rutkowska

Białystok, Poland

Laboratory of Bioinformatics and Multi-omics Analysis

2024-10-01 – 2025-02-10

Medical University of Białystok

Ronja Tittel

Białystok, Poland

Laboratory of Bioinformatics and Multi-omics Analysis

2024-04-01 – 2024-10-01

BoneLab Dresden

Mariia Rutkowska

Dresden, Germany

OsteoHematology

Earlier research stays (25)
2024 1

2024-01-15 – 2024-01-23

Universitat Autònoma de Barcelona

Jarosław (Jarek) Chilimoniuk

Barcelona, Spain

Protein Folding and Conformational Diseases

2023 2

2023-05-13 – 2023-05-27

Universitat Autònoma de Barcelona

Jarosław (Jarek) Chilimoniuk

Barcelona, Spain

Protein Folding and Conformational Diseases

2023-01-16 – 2023-01-23

Universitat Autònoma de Barcelona

Jarosław (Jarek) Chilimoniuk

Barcelona, Spain

Protein Folding and Conformational Diseases

2022 4

2022-12-05 – 2022-12-24

Vilnius University

Jarosław (Jarek) Chilimoniuk

Vilnius, Lithuania

Group of Amyloid Research

2022-05-01 – ongoing

Universitat Autònoma de Barcelona

Michał Burdukiewicz

Barcelona, Spain

Protein Folding and Conformational Diseases

2022-02-15 – 2023-12-14

Institute for Bioengineering of Catalonia

Valentín Iglesias

Barcelona, Spain

Nanomalaria

2022-02-15 – 2023-12-14

Barcelona Institute for Global Health

Valentín Iglesias

Barcelona, Spain

Nanomalaria

2021 1

2021-11-01 – 2021-12-26

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2020 2

2020-10-01 – 2021-09-30

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2020-03-01 – 2020-05-29

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2019 4

2019-07-01 – 2019-07-15

Warsaw University of Technology

Jarosław (Jarek) Chilimoniuk

Warsaw, Poland

MI2 DataLab

2019-07-01 – 2019-12-16

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2019-04-15 – 2019-05-31

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2019-02-04 – 2019-02-15

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Multiparameter Diagnostic

2018 4

2018-11-02 – 2018-11-09

Vilnius University

Jarosław (Jarek) Chilimoniuk

Vilnius, Lithuania

Group of Amyloid Research

2018-05-01 – 2018-05-31

University of Michigan

Michał Burdukiewicz

Michigan, USA

Chapman Lab

2018-04-01 – 2018-09-30

Brandenburg University of Technology Cottbus-Senftenberg

Jarosław (Jarek) Chilimoniuk

Senftenberg, Germany

Image Based Assays

2018-01-07 – 2018-01-26

Vilnius University

Jarosław (Jarek) Chilimoniuk

Vilnius, Lithuania

Group of Amyloid Research

2017 3

2017-10-30 – 2017-02-27

Università degli Studi di Padova

Valentín Iglesias

Padova, Italy

BioComputing UP

2017-10-01 – 2018-03-31

Denmark Technical University

Michał Burdukiewicz

Copenhagen, Denmark

Protein Sorting

2017-02-01 – 2017-02-28

Denmark Technical University

Michał Burdukiewicz

Copenhagen, Denmark

Center for Biological Sequence Analysis

2016 1

2016-03-01 – 2014-04-30

Brandenburg University of Technology Cottbus-Senftenberg

Michał Burdukiewicz

Senftenberg, Germany

InnoProfile Research Group

2015 1

2015-07-01 – 2015-08-30

Brandenburg University of Technology Cottbus-Senftenberg

Michał Burdukiewicz

Senftenberg, Germany

InnoProfile Research Group

2014 1

2014-06-01 – 2014-09-30

Technical University Dresden

Michał Burdukiewicz

Dresden, Germany
2013 1

2013-07-01 – 2013-09-30

Brandenburg University of Technology Cottbus-Senftenberg

Michał Burdukiewicz

Senftenberg, Germany

InnoProfile Research Group

The extended team

Our four-legged colleagues, and an important part of life around the lab.

Czarek
Czarek
Delma
Delma
Piksel
Piksel
Invi
Invi
Lusia
Lusia
Elis
Elis