Oriol Bárcenas

Academic CV and research profile of Oriol Bárcenas, a BioGenies collaborator.

Contact

Email ORCID

Conferences, workshops and training

2 conference and training events

2025-05-20 – 2025-05-23

Meeting on Non-globular proteins in the era of Machine Learning

Vilnius, Lithuania

Talks, posters & participation (1)

• Talk

  StriFi: Comprehensive database of Fibril Structures

2024-10-20 – 2024-10-24

Human Proteome Organisation World Congress

Dresden, Germany

Talks, posters & participation (1)

• Poster

  Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation

Publications

24 publications listed · most recent first

Shedding light on Gaussia Luciferase conformational space using multi-conformation enhanced sampling simulations

bioRxiv (Cold Spring Harbor Laboratory) · 2026-09-20

Authors & citation details

Berta Bori-Bru, Oriol Bárcenas, Julian O. Streit, Kresten Lindorff‐Larsen, Ramón Crehuet

Authorship: coauthor

https://doi.org/10.64898/2026.09.18.752584

Full‐length brain‐derived α‐synuclein fibril models reveal fuzzy‐coat control of peptide recognition

Protein Science · 2026-09-15

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Giulio Tesei, F. Emil Thomasen, Kresten Lindorff‐Larsen, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1002/pro.70782

Full-Length Molecular Models of Brain-Derived α-Synuclein Fibrils Reveal a Fuzzy-Coat-Mediated Mechanism for Selective Peptide Binding

bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-20

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Giulio Tesei, F. Emil Thomasen, Kresten Lindorff‐Larsen, Salvador Ventura

Authorship: coauthor

https://doi.org/10.64898/2026.04.16.718707

Earlier publications (21)

2026 5

GROMACS+PLUMED pre-2023 vs. 2024+ analysis of biasing forces and energies (PT-WTE)

Zenodo (CERN European Organization for Nuclear Research) · 2026-03-24

Authors & citation details

Oriol Bárcenas, Ramón Crehuet

Authorship: first

https://doi.org/10.5281/zenodo.19203432

Multivalent Protein Nanorings for Broad and Potent SARS‐CoV‐2 Neutralization (Adv. Healthcare Mater. 10/2026)

Advanced Healthcare Materials · 2026-03-01

Authors & citation details

Molood Behbahanipour, Carla Jimena Goldin, Cecilia Arahí Prato, Ana Luz Paletta, Oriol Bárcenas, Susanna Navarro, Jordi Pujols, Daniel Horacio Murgida, María Virginia Tribulatti, Sebastián Esperante, Damián Álvarez-Paggi, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1002/adhm.70738

Passive immunotherapy for Parkinson’s disease in 2025: Status and perspective

Neural Regeneration Research · 2026-01-27

Authors & citation details

Oriol Bárcenas, Jordi Pujols, Salvador Ventura

Authorship: coauthor

https://doi.org/10.4103/nrr.nrr-d-25-01792

AGGRESCAN and its evolution: A two-decade perspective on protein aggregation prediction

Biophysical Reviews · 2026-01-19

Authors & citation details

Giulia Pesce, Oriol Bárcenas, Salvador Ventura

Authorship: coauthor, corresponding

https://doi.org/10.1007/s12551-025-01404-9

AggrescanAI: Prediction of Aggregation-Prone Regions Using Contextualized Embeddings

Journal of Molecular Biology · 2026-01-16

Authors & citation details

Alvaro M. Navarro, Santiago Palacios, Thierry Galmarini, Oriol Bárcenas, Salvador Ventura, Cristina Marino‐Buslje

Authorship: coauthor

https://doi.org/10.1016/j.jmb.2026.169643

2025 5

Liquid-liquid phase separation (LLPS) as a sensing and adaptation mechanism: An evidence-based hypothesis on AP2 transcription factors in the malaria parasite

bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-12

Authors & citation details

Valentín Iglesias, Yunuen Avalos‐Padilla, Oriol Bárcenas, Xavier Fernàndez‐Busquets, Xavier Fernàndez‐Busquets

Authorship: coauthor

https://doi.org/10.64898/2025.12.10.693351

Multivalent Protein Nanorings for Broad and Potent SARS‐CoV‐2 Neutralization

Advanced Healthcare Materials · 2025-10-05

Authors & citation details

Molood Behbahanipour, Carla Jimena Goldin, Cecilia Arahí Prato, Ana Luz Paletta, Oriol Bárcenas, Susanna Navarro, Jordi Pujols, Daniel Horacio Murgida, María Virginia Tribulatti, Sebastián Esperante, Damián Álvarez-Paggi, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1002/adhm.202503487

Structural Study of a Peptide Epitope Bearing Multiple Post-Translational Modifications in Rheumatoid Arthritis

International Journal of Molecular Sciences · 2025-09-16

Authors & citation details

Maria Jose Gomara, Cristina García-Moreno, Oriol Bárcenas, Raúl Castellanos‐Moreira, Juan Camilo Sarmiento-Monroy, Ramón Crehuet, Yolanda Pérez, Raimón Sanmartí, Isabel Haro

Authorship: coauthor

https://doi.org/10.3390/ijms26189026

Comprehensive protein datasets and benchmarking for liquid–liquid phase separation studies

Genome biology · 2025-07-08

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Valentín Iglesias, Michał Jan Burdukiewicz, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1186/s13059-025-03668-6

Determinants of alpha-synuclein pathogenesis in Parkinson’s disease

Neural Regeneration Research · 2025-02-24

Authors & citation details

Oriol Bárcenas, Salvador Ventura

Authorship: first

https://doi.org/10.4103/nrr.nrr-d-24-01357

2024 5

Aggregating amyloid resources: A comprehensive review of databases on amyloid-like aggregation

Computational and Structural Biotechnology Journal · 2024-10-29

Authors & citation details

Valentín Iglesias, Jarosław Chilimoniuk, Carlos Pintado‐Grima, Oriol Bárcenas, Salvador Ventura, Michał Jan Burdukiewicz

Authorship: coauthor

https://doi.org/10.1016/j.csbj.2024.10.047

Aggrescan4D: A comprehensive tool for pH‐dependent analysis and engineering of protein aggregation propensity

Protein Science · 2024-09-26

Authors & citation details

Mateusz Zalewski, Valentín Iglesias, Oriol Bárcenas, Salvador Ventura, Sebastian Kmiecik

Authorship: coauthor

https://doi.org/10.1002/pro.5180

Bioengineered self-assembled nanofibrils for high-affinity SARS-CoV-2 capture and neutralization

Journal of Colloid and Interface Science · 2024-06-24

Authors & citation details

Molood Behbahanipour, Susanna Navarro, Oriol Bárcenas, Javier García‐Pardo, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1016/j.jcis.2024.06.175

Structural information in therapeutic peptides: Emerging applications in biomedicine

FEBS Open Bio · 2024-06-14

Authors & citation details

Valentín Iglesias, Oriol Bárcenas, Carlos Pintado‐Grima, Michał Jan Burdukiewicz, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1002/2211-5463.13847

Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation

Nucleic Acids Research · 2024-05-13

Authors & citation details

Oriol Bárcenas, Mateusz Zalewski, Valentín Iglesias, Carlos Pintado‐Grima, Grzegorz Firlik, Michał Jan Burdukiewicz, Sebastian Kmiecik, Salvador Ventura

Authorship: first

https://doi.org/10.1093/nar/gkae382

2023 3

Expanding the Landscape of Amyloid Sequences with CARs-DB: A Database of Polar Amyloidogenic Peptides from Disordered Proteins

Methods in molecular biology · 2023-09-07

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1007/978-1-0716-3441-7_10

A Review of Fifteen Years Developing Computational Tools to Study Protein Aggregation

Biophysica · 2023-01-18

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Andrea Bartolomé-Nafría, Marc Fornt‐Suñé, Valentín Iglesias, Javier García‐Pardo, Salvador Ventura

Authorship: coauthor

https://doi.org/10.3390/biophysica3010001

aSynPEP-DB: a database of biogenic peptides for inhibiting α-synuclein aggregation

Database · 2023-01-01

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Valentín Iglesias, Jaime Santos, Zoe Manglano-Artuñedo, Irantzu Pallarès, Michał Jan Burdukiewicz, Salvador Ventura

Authorship: coauthor

https://doi.org/10.1093/database/baad084

2022 3

In-Silico Analysis of pH-Dependent Liquid-Liquid Phase Separation in Intrinsically Disordered Proteins

Biomolecules · 2022-07-12

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Salvador Ventura

Authorship: coauthor

https://doi.org/10.3390/biom12070974

CARs-DB: A Database of Cryptic Amyloidogenic Regions in Intrinsically Disordered Proteins

Frontiers in Molecular Biosciences · 2022-05-18

Authors & citation details

Carlos Pintado‐Grima, Oriol Bárcenas, Zoe Manglano-Artuñedo, Rita Vilaça, Sandra Macedo‐Ribeiro, Irantzu Pallarès, Jaime Santos, Salvador Ventura

Authorship: coauthor

https://doi.org/10.3389/fmolb.2022.882160

The dynamic landscape of peptide activity prediction

Computational and Structural Biotechnology Journal · 2022-01-01

Authors & citation details

Oriol Bárcenas, Carlos Pintado‐Grima, Katarzyna Sidorczuk, Felix Teufel, Henrik Nielsen, Salvador Ventura, Michał Jan Burdukiewicz

Authorship: first

https://doi.org/10.1016/j.csbj.2022.11.043

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