Software & databases

Explore BioGenies web applications, R packages, databases and open research software.

Research methods, ready to use. Explore the web applications, databases and R packages developed by our team. Read the research stories behind the tools.

Read three tool stories in plain language

Web servers

MetaboCrates - tool for BioCrates kits data processing

imputomics - missing data imputation tool

AMPBenchmark - benchmarking of models for antimicrobial (AMP) peptide prediction

HaDeX - HDX-MS data processing tool

countfitteR - count data processing tool

AmyloGram - amyloid properties predictor

AmpGram - antimicrobial (AMP) peptide predictor

PlastoGram - subchloroplast localisation predictor

CancerGram - anticancer peptide predictor

MethanoGram - methanogens culture conditions predictor

Databases

AmyloGraph - amyloid-amyloid interaction database

Curated list of peer-reviewed peptide function predictors

Curated list of peer-reviewed amyloid databases

Curated list of peer-reviewed amyloid databases

Tools

tidysq - tidy R package for analysis and manipulation of biological sequences

biogram - R package for extraction and analysis of n-grams from biological sequences

seqR - R package for fast k-mer counting

PCRedux - R package for feature extraction from qPCR amplification curve data

Code repositories

MetaboCrates

AmyloGraph

imputomics

HaDeX

countfitteR

AmyloGram

PlastoGram

AmpGram

CancerGram

PhyMet2 - database and toolkit for phylogenetic and metabolic analyses of methanogens

signalHsmm

AMPBenchmark - benchmarking of models for antimicrobial (AMP) peptide prediction

Curated list of peer-reviewed peptide function predictors

dpcR - tool for analysis, visualisation and simulation of digital PCR experiments

Curated list of peer-reviewed amyloid databases

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