Jarosław (Jarek) Chilimoniuk

Research profile and academic CV of Jarosław (Jarek) Chilimoniuk: publications, experience, education and BioGenies news.

Jarosław (Jarek) Chilimoniuk

Contact

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Research stays

2024-01-15 – 2024-01-23

Protein Folding and Conformational Diseases

Institute of Biotechnology and Biomedicine · Universitat Autònoma de Barcelona · Barcelona · Spain

Barcelona, Spain

2023-05-13 – 2023-05-27

Protein Folding and Conformational Diseases

Institute of Biotechnology and Biomedicine · Universitat Autònoma de Barcelona · Barcelona · Spain

Barcelona, Spain

2023-01-16 – 2023-01-23

Protein Folding and Conformational Diseases

Institute of Biotechnology and Biomedicine · Universitat Autònoma de Barcelona · Barcelona · Spain

Barcelona, Spain
Earlier records (11)
2022 1

2022-12-05 – 2022-12-24

Group of Amyloid Research

Institute of Biotechnology · Vilnius University · Vilnius · Lithuania

Vilnius, Lithuania
2021 1

2021-11-01 – 2021-12-26

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany
2020 2

2020-10-01 – 2021-09-30

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany

2020-03-01 – 2020-05-29

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany
2019 4

2019-07-01 – 2019-07-15

MI2 DataLab

Faculty of Mathematics and Information Science · Warsaw University of Technology · Warsaw · Poland

Warsaw, Poland

2019-07-01 – 2019-12-16

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany

2019-04-15 – 2019-05-31

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany

2019-02-04 – 2019-02-15

Multiparameter Diagnostic

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany
2018 3

2018-11-02 – 2018-11-09

Group of Amyloid Research

Institute of Biotechnology · Vilnius University · Vilnius · Lithuania

Vilnius, Lithuania

2018-04-01 – 2018-09-30

Image Based Assays

Institute of Biotechnology · Brandenburg University of Technology Cottbus-Senftenberg · Senftenberg · Germany

Senftenberg, Germany

2018-01-07 – 2018-01-26

Group of Amyloid Research

Institute of Biotechnology · Vilnius University · Vilnius · Lithuania

Vilnius, Lithuania

Experience

2024-03-01 – ongoing

Reaserch assistant | Bioinformatician

Bioinformatics and Multiomics Analysis Laboratory · Clinical Research Centre · Medical University of Białystok

Białystok, Poland

2023-01-09 – 2024-03-01

Senior technician | Bioinformatician

Metabolomics Laboratory · Clinical Research Centre · Medical University of Białystok

Białystok, Poland

2017-10-01 – 2023-07-06

PhD student | Bioinformatician | Experimentalist

Department of Bioinformatics and Genomics · Faculty of Biotechnology · University of Wrocław

Wrocław, Poland
Earlier records (2)
2013 1

2013-10-01 – 2015-08-13

MSc student | Experimentalist

Laboratory of Environmental Pollution Analysis · Faculty of Biology · University of Warsaw

Warsaw, Poland
2012 1

2012-10-01 – 2013-09-06

BSc student | Experimentalist

Department of Stem Cell Bioengineering · Mossakowski Medical Research Centre PAS · University of Warsaw

Warsaw, Poland

Education

2020 – 2021 Brandenburg University of Technology Cottbus-Senftenberg PhD
Senftenberg, Germany

Exchange studies, German Academic Exchange Service scholarship, Biotechnology

2020-10-01 – 2021-09-30 · Senftenberg, Germany

2018 – 2023 University of Wrocław PhD
Wrocław, Poland

BioTechNan - Program of Interdisciplinary Environmental PhD Studies KNOW in the area of Biotechnology and Nanotechnology

Thesis: Bioinformatic and experimental analyses of bacterial functional amyloids CsgA and CsgB

2018-10-01 – 2023-07-06 · Wrocław, Poland

2017 – 2018 University of Wrocław PhD
Wrocław, Poland

Molecular Biology

2017-10-01 – 2018-09-30 · Wrocław, Poland

2013 – 2015 University of Warsaw MSc
Warsaw, Poland

Biotechnology, specialization in Molecular Biology

Thesis: Disposal of hardly biodegradable feedstock wastes in methane fermentation process

2013-10-01 – 2015-08-13 · Warsaw, Poland

2010 – 2013 University of Warsaw BSc
Warsaw, Poland

Biotechnology

Thesis: Localization of hSUV3 protein and γ-tubulin at different developmental stages of the human umbilical cord blood-derived neural stem cell line (HUCB-NSC)

2010-10-01 – 2013-09-06 · Warsaw, Poland

Conferences, workshops and training

21 conference and training events

2026-02-17 – 2026-02-20

Non-globular proteins in the era of Machine Learning Training School

Seville, Spain
Talks, posters & participation (1)
  • Training

    Introduction to Machine learning for Non-globular proteins

2025-09-15 – 2025-09-17

Symposium of the Polish Bioinformatics Society

Białystok, Poland
Talks, posters & participation (1)
  • Poster

    Aggregating amyloid resources: comprehensive list of amyloid-like aggregation databases

2025-06-22 – 2025-06-26

Metabolomics

Prague, Czech Republic
Talks, posters & participation (1)
  • Poster

    imputomics evolved: expanding imputation methods and redesigning benchmarks for missing data imputation

Earlier activities (18)
2025 1

2025-05-20 – 2025-05-23

Meeting on Non-globular proteins in the era of Machine Learning

Vilnius, Lithuania
Talks, posters & participation (1)
  • Poster

    Aggregating amyloid resources

2024 3

2024-10-20 – 2024-10-24

Human Proteome Organisation World Congress

Dresden, Germany
Talks, posters & participation (1)
  • Poster

    imputomics 2.0: bridging data gaps in proteomics with missing value imputation algorithms and their benchmark

2024-09-11 – 2024-09-13

Symposium of the Polish Bioinformatics Society

Warsaw, Poland
Talks, posters & participation (1)
  • Poster

    imputomics 2.0: comprehensive R package for missing data imputation in proteomics data

2024-05-14 – 2024-05-17

Meeting on Non-globular proteins in the era of Machine Learning

Thessaloniki, Greece
Talks, posters & participation (1)
  • Poster

    imputomics 2.0: comprehensive R package for missing data imputation in proteomics data

2023 2
IBID

2023-10-17 – 2023-10-19

International Biotech Innovation Days

Senftenberg, Germany
Talks, posters & participation (1)
  • Talk

    Imputomics: comprehensive R package for missing data imputation in metabolomics data

MetCircle

2023-01-27 – 2023-01-28

Metabolomics Circle

Wrocław, Poland
Talks, posters & participation (1)
  • Talk

    Imputomics: imputation of missing values for ‘omics’ dat

2020 3
IBID

2020-10-28 – 2020-10-29

International Biotech Innovation Days

Senftenberg, Germany
Talks, posters & participation (1)
  • Talk

    countfitteR: count data analysis for precision medicine

2020-09-24 – 2020-09-27

Why R? Conference

Warszawa, Poland
Talks, posters & participation (1)
  • Talk

    Count data analysis with countfitteR

DGHM & VAAM

2020-03-08 – 2020-03-11

Joint Microbiology & Infection Conference of the German Society for Hygiene and Microbiology and the Association of General and Applied Microbiology

Leipzig, Germany
Talks, posters & participation (1)
  • Poster

    AmpGram – a novel tool for prediction of antimicrobial peptides

2019 4

2019-09-26 – 2019-09-29

Why R? Conference

Warszawa, Poland
Talks, posters & participation (1)
  • Talk

    AmyloGram: the R package and a Shiny server for amyloid prediction

SatRday

2019-05-17 – 2019-05-18

Conference for users of the R Language

Gdańsk, Poland
Talks, posters & participation (1)
  • Talk

    AmyloGram: prediction of amyloid sequences in R

EuPA

2019-03-24 – 2019-03-28

Congress of the European Proteomic Association

Potsdam, Germany
Talks, posters & participation (1)
  • Poster

    AmyloGram: prediction of amyloid sequences in R

VAAM

2019-03-17 – 2019-03-19

Conference of the Association for General and Applied Microbiology

Mainz, Germany
Talks, posters & participation (1)
  • Poster

    Co-evolution of curli components CsgA and CsgB

2018 5
PL in ML

2018-12-14 – 2018-12-17

Polish View on Machine Learning

Warsaw, Poland
Talks, posters & participation (1)
  • Poster

    AmyloGram: prediction of amyloid sequences in R

ASM

2018-10-07 – 2018-10-11

American Society for Microbiology Conference on Biofilms

Washington DC, USA
Talks, posters & participation (1)
  • Poster

    CsgA, CsgB and CsgC - evolutionary Interplay in curli biogenesis

2018-09-05 – 2018-09-07

Symposium of the Polish Bioinformatics Society

Wrocław, Poland
Talks, posters & participation (1)
  • Talk

    PhyMet2: a database and toolkit for phylogenetic and metabolic analyses of methanogens

IBID

2018-05-23 – 2018-05-25

International Biotech Innovation Days

Senftenberg, Germany
Talks, posters & participation (1)
  • Poster

    PhyMet2: database and algorithm predicting culturing conditions of methanogens

VAAM

2018-04-15 – 2018-04-18

Conference of the Association for General and Applied Microbiology

Wolfsburg, Germany
Talks, posters & participation (1)
  • Poster

    PhyMet2: complex database containing records on methanogens with unique feature (MethanoGram) allowing prediction of culture conditions based on 16S rRNA

Publications

13 publications listed · most recent first

Earlier publications (10)
2024 3
2022 2
AmyloGraph: a comprehensive database of amyloid–amyloid interactions

Nucleic Acids Research · 2022-10-16

Authors & citation details

Michał Jan Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Laura Bąkała, Anna Lassota, Jakub Stecko, Natalia Szymańska, Natalia Szymańska, Natalia Szymańska, Jakub Wiktor Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jarosław Chilimoniuk, Izabela Jęśkowiak, Marlena Gąsior‐Głogowska, Małgorzata Kotulska

Authorship: coauthor

https://doi.org/10.1093/nar/gkac882
2021 2
2020 1
2018 2

Other activities

  • Association of Wrocław R Users (STWUR) meetings co-organizer - R language workshops
  • Co-organizer of WhyR? 2019 Conference in Warsaw
  • Co-organizer of WhyR? 2018 Conference in Wrocław
  • CEO of PhD Bioinformatics Club at University of Wrocław, 2017-2023