Rafał Kolenda

Academic CV and research profile of Rafał Kolenda, a BioGenies collaborator.

Publications

41 publications listed · most recent first

Copper is an intestinal habitat filter affecting the gut microbiota interactions with Salmonella Typhimurium

Microbiome · 2026-03-28

Authors & citation details

Rafał Kolenda, Marwa M. Hassan, Ainhoa Arrieta-Gisasola, Rebecca Ansorge, Katarzyna Sidorczuk, Luke Acton, Gaetan J. A. Thilliez, Dave Baker, Michał Jan Burdukiewicz, Mark D. Stares, Hilary P. Browne, Gwénaëlle Le Gall, Mark P. Stevens, Trevor D. Lawley, Andreas J. Bäumler, Roberto La Ragione, Falk Hildebrand, Robert A. Kingsley

Authorship: first, corresponding

https://doi.org/10.1186/s40168-025-02322-4

Additional file 3 of Copper is an intestinal habitat filter affecting the gut microbiota interactions with Salmonella Typhimurium

Figshare · 2026-03-28

Authors & citation details

Rafał Kolenda, Marwa M. Hassan, Ainhoa Arrieta-Gisasola, Rebecca Ansorge, Katarzyna Sidorczuk, Luke Acton, Gaetan J. A. Thilliez, Dave Baker, Michał Jan Burdukiewicz, Mark D. Stares, Hilary P. Browne, Gwenaelle Le Gall, Mark P. Stevens, Trevor D. Lawley, Andreas J. Bäumler, Roberto La Ragione, Falk Hildebrand, Robert A. Kingsley

Authorship: first

https://doi.org/10.6084/m9.figshare.31969200

Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation

PLoS Genetics · 2025-05-02

Authors & citation details

Oliver J. Charity, Gaetan J. A. Thilliez, Haider Al-Khanaq, Luke Acton, Rafał Kolenda, Matt Bawn, Liljana Petrovska, Robert A. Kingsley

Authorship: coauthor

https://doi.org/10.1371/journal.pgen.1011688

Earlier publications (38)

2025 2

SanA is an inner membrane protein mediating Salmonella Typhimurium infection

Microbiology Spectrum · 2025-04-30

Authors & citation details

Adrianna Stypułkowska, Rafał Kolenda, Ewa Carolak, Joanna Czajkowska, Agata Dutkiewicz, Wiktoria Waszczuk, Wiktoria Bińczyk, Teresa L. M. Thurston, Krzysztof Grzymajło

Authorship: coauthor

https://doi.org/10.1128/spectrum.02833-24

Avian pathogenic Escherichia coli-targeting phages for biofilm biocontrol in the poultry industry

Veterinary Microbiology · 2025-01-02

Authors & citation details

Paulina Śliwka, David Sáez Moreno, Maciej Kuczkowski, Rafał Kolenda, Sylwia Kozioł, Magdalena Narajczyk, Uwe H. Roesler, Ludwika Tomaszewska-Hetman, Marta Kuźmińska-Bajor

Authorship: coauthor

https://doi.org/10.1016/j.vetmic.2024.110363

2024 8

Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation

bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-17

Authors & citation details

Oliver J. Charity, Gaetan J. A. Thilliez, Haider Al-Khanaq, Luke Acton, Rafał Kolenda, Matt Bawn, Liljana Petrovska, Robert A. Kingsley

Authorship: coauthor

https://doi.org/10.1101/2024.09.17.613263

adhesiomeR: a tool for Escherichia coli adhesin classification and analysis

BMC Genomics · 2024-06-17

Authors & citation details

Katarzyna Sidorczuk, Michał Jan Burdukiewicz, Joachim Fritscher, Robert A. Kingsley, Peter Schierack, Falk Hildebrand, Rafał Kolenda

Authorship: last, corresponding

https://doi.org/10.1186/s12864-024-10525-6

FdeC expression regulates motility and adhesion of the avian pathogenic Escherichia coli strain IMT5155

Veterinary Research · 2024-05-31

Authors & citation details

Adrianna Aleksandrowicz, Rikke Brødsgaard Kjærup, Krzysztof Grzymajło, Javier Muñoz, Javier Muñoz, Dominika Borowska, Samantha Sives, Lonneke Vervelde, Tina Sørensen Dalgaard, Robert A. Kingsley, Rafał Kolenda

Authorship: last, corresponding

https://doi.org/10.1186/s13567-024-01327-5

Characterization of clumpy adhesion of Escherichia coli to human cells and associated factors influencing antibiotic sensitivity

Microbiology Spectrum · 2024-03-26

Authors & citation details

Muhammad Moman Khan, Katarzyna Sidorczuk, Adrianna Aleksandrowicz, Christina Ludwig, Aamir Ali, Robert A. Kingsley, Peter Schierack, Rafał Kolenda

Authorship: last

https://doi.org/10.1128/spectrum.02606-23

Collateral sensitivity increases the efficacy of a rationally designed bacteriophage combination to control Salmonella enterica

Journal of Virology · 2024-02-20

Authors & citation details

Luke Acton, Hannah V. Pye, Gaetan J. A. Thilliez, Rafał Kolenda, Michaela Matthews, A. Keith Turner, Muhammad Yasir, Emma R. Holden, Haider Al-Khanaq, Mark Alexander Webber, Evelien M. Adriaenssens, Robert A. Kingsley

Authorship: coauthor

https://doi.org/10.1128/jvi.01476-23

imputomics: web server and R package for missing values imputation in metabolomics data

Bioinformatics · 2024-02-19

Authors & citation details

Jarosław Chilimoniuk, Krystyna Grzesiak, Jakub Kała, Dominik Nowakowski, Adam Jacek Kretowski, Rafał Kolenda, Michał Ciborowski, Michał Jan Burdukiewicz

Authorship: coauthor

https://doi.org/10.1093/bioinformatics/btae098

Membrane properties modulation by SanA: implications for xenobiotic resistance in Salmonella Typhimurium

Frontiers in Microbiology · 2024-01-05

Authors & citation details

Adrianna Aleksandrowicz, Rafał Kolenda, Teresa L. M. Thurston, Jarosław Suchański, Krzysztof Grzymajło

Authorship: coauthor

https://doi.org/10.3389/fmicb.2023.1340143

SanA is an inner membrane protein mediating the early stages of Salmonella infection

bioRxiv (Cold Spring Harbor Laboratory) · 2024-01-05

Authors & citation details

Adrianna Aleksandrowicz, Rafał Kolenda, Teresa L. M. Thurston, Krzysztof Grzymajło

Authorship: coauthor

https://doi.org/10.1101/2024.01.05.574334

2023 4

Profiling of the Helicobacter pylori redox switch HP1021 regulon using a multi-omics approach

Nature Communications · 2023-10-23

Authors & citation details

Mateusz Noszka, Agnieszka Strzałka, Jakub Muraszko, Rafał Kolenda, Chen Meng, Christina Ludwig, Kerstin Stingl, Anna Magdalena Zawilak-Pawlik

Authorship: coauthor

https://doi.org/10.1038/s41467-023-42364-6

The role of AJB35136 and fdtA genes in biofilm formation by avian pathogenic Escherichia coli

BMC Veterinary Research · 2023-08-18

Authors & citation details

Muhammad Moman Khan, Aamir Ali, Rafał Kolenda, Olugbenga Adekunle Olowe, Ganwu Li, Peter Schierack

Authorship: coauthor

https://doi.org/10.1186/s12917-023-03672-7

Genomic characterization of enterohaemolysin-encoding haemolytic Escherichia coli of animal and human origin

Microbial Genomics · 2023-04-27

Authors & citation details

Katarzyna Sidorczuk, Adrianna Aleksandrowicz, Michał Jan Burdukiewicz, Robert A. Kingsley, Rafał Kolenda

Authorship: last

https://doi.org/10.1099/mgen.0.000999

Strain and serovar variants of Salmonella enterica exhibit diverse tolerance to food chain-related stress

Food Microbiology · 2023-02-08

Authors & citation details

Hannah V. Pye, Gaetan J. A. Thilliez, Luke Acton, Rafał Kolenda, Haider Al-Khanaq, Robert A. Kingsley

Authorship: coauthor

https://doi.org/10.1016/j.fm.2023.104237

2022 4

Strain and serovar variants of Salmonella enterica exhibit diverse tolerance to food chain-related stress

bioRxiv (Cold Spring Harbor Laboratory) · 2022-10-11

Authors & citation details

Hannah V. Pye, Gaetan J. A. Thilliez, Luke Acton, Rafał Kolenda, Haider Al-Khanaq, Robert A. Kingsley

Authorship: coauthor

https://doi.org/10.1101/2022.10.11.511718

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

Briefings in Bioinformatics · 2022-08-21

Authors & citation details

Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch, Jakub Kała, Dominik Rafacz, Laura Bąkała, Jadwiga Słowik, Rafał Kolenda, Stefan Rödiger, Legana C H W Fingerhut, Ira Cooke, Paweł Mackiewicz, Michał Jan Burdukiewicz

Authorship: coauthor

https://doi.org/10.1093/bib/bbac343

Application of Loop-Mediated Isothermal Amplification (LAMP) in Sex Identification of Parrots Bred in Egypt

Biology · 2022-04-08

Authors & citation details

Naglaa Mohammed Hagag, Rafał Kolenda, Maciej Zacharski

Authorship: coauthor

https://doi.org/10.3390/biology11040565

Adhesion of Enteropathogenic, Enterotoxigenic, and Commensal Escherichia coli to the Major Zymogen Granule Membrane Glycoprotein 2

Applied and Environmental Microbiology · 2022-01-12

Authors & citation details

Rafał Kolenda, Jarosław Chilimoniuk, Krzysztof Grzymajło, Stefan Rödiger, Aamir Ali, Veronika L Tchesnokova, Dirk Roggenbuck, Peter Schierack

Authorship: coauthor

https://doi.org/10.1128/aem.02279-21

2021 4

Genome placement of alpha-haemolysin cluster is associated with alpha-haemolysin sequence variation, adhesin and iron acquisition factor profile of Escherichia coli

Microbial Genomics · 2021-12-23

Authors & citation details

Rafał Kolenda, Katarzyna Sidorczuk, Mateusz Noszka, Adrianna Aleksandrowicz, Muhammad Moman Khan, Michał Jan Burdukiewicz, Peter Schierack

Authorship: first

https://doi.org/10.1099/mgen.0.000743

Genomic and functional characterization of five novel Salmonella-targeting bacteriophages

Virology Journal · 2021-09-08

Authors & citation details

Marta Kuźmińska-Bajor, Paulina Śliwka, Maciej Ugorski, Aneta Skaradzińska, Maciej Kuczkowski, Magdalena Narajczyk, Alina Wieliczko, Rafał Kolenda

Authorship: last

https://doi.org/10.1186/s12985-021-01655-4

Whatever makes them stick – Adhesins of avian pathogenic Escherichia coli

Veterinary Microbiology · 2021-04-24

Authors & citation details

Adrianna Aleksandrowicz, Muhammad Moman Khan, Katarzyna Sidorczuk, Mateusz Noszka, Rafał Kolenda

Authorship: last, corresponding

https://doi.org/10.1016/j.vetmic.2021.109095

Investigation of Commensal Escherichia coli Populations of Cormorant Hatchlings in the Absence of Anthropogenic Impacts in Remote Areas of West Mongolia

Microorganisms · 2021-02-12

Authors & citation details

Muhammad Moman Khan, Rafał Kolenda, Peter Schierack, Stefan Rödiger, Davaa Lkhagvasuren, Sebastian Guenther, Katharina Schaufler

Authorship: coauthor

https://doi.org/10.3390/microorganisms9020372

2020 3

Identification of Natural Mutations Responsible for Altered Infection Phenotypes of Salmonella enterica Clinical Isolates by Using Cell Line Infection Screens

Applied and Environmental Microbiology · 2020-11-02

Authors & citation details

Rafał Kolenda, Michał Jan Burdukiewicz, Adrianna Aleksandrowicz, Aamir Ali, István Szabó, Karsten Tedin, Josefin Bartholdson Scott, Peter Schierack

Authorship: first

https://doi.org/10.1128/aem.02177-20

Novel Avian Pathogenic Escherichia coli Genes Responsible for Adhesion to Chicken and Human Cell Lines

Applied and Environmental Microbiology · 2020-08-07

Authors & citation details

Aamir Ali, Rafał Kolenda, Muhammad Moman Khan, Ganwu Li, Lothar H. Wieler, Karsten Tedin, Dirk Roggenbuck, Peter Schierack

Authorship: coauthor

https://doi.org/10.1128/aem.01068-20

Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia

Frontiers in Microbiology · 2020-07-21

Authors & citation details

Peter Schierack, Stefan E. Heiden, Muhammad Moman Khan, Rafał Kolenda, Davaa Lkhagvasuren, Stefan Rödiger, Sebastian Guenther, Katharina Schaufler

Authorship: coauthor

https://doi.org/10.3389/fmicb.2020.01699

2019 2

Everything You Always Wanted to Know About Salmonella Type 1 Fimbriae, but Were Afraid to Ask

Frontiers in Microbiology · 2019-05-14

Authors & citation details

Rafał Kolenda, Maciej Ugorski, Krzysztof Grzymajło

Authorship: first

https://doi.org/10.3389/fmicb.2019.01017

Primary pulmonary adenocarcinoma in roe deer – a case report

Medycyna Weterynaryjna · 2019-01-01

Authors & citation details

Michał Bednarski, Rafał Kolenda, M Houszka

Authorship: coauthor

https://doi.org/10.21521/mw.6206

2018 3

Mucosal Autoimmunity to Cell-Bound GP2 Isoforms Is a Sensitive Marker in PSC and Associated With the Clinical Phenotype

Frontiers in Immunology · 2018-08-28

Authors & citation details

Mandy Sowa, Rafał Kolenda, Daniel C. Baumgart, Daniel C. Baumgart, Johann Pratschke, Mária Papp, Tamás Tornai, Jarosław Suchański, Dimitrios Petrou Bogdanos, Maria G. Mytilinaiou, Martin Walter Laass, Christoph Schramm, André Franke, Dirk Roggenbuck, Peter Schierack

Authorship: coauthor

https://doi.org/10.3389/fimmu.2018.01959

Adhesion of Salmonella to Pancreatic Secretory Granule Membrane Major Glycoprotein GP2 of Human and Porcine Origin Depends on FimH Sequence Variation

Frontiers in Microbiology · 2018-08-22

Authors & citation details

Rafał Kolenda, Michał Jan Burdukiewicz, Stefan Rödiger, István Szabó, Alexander Böhm, Ulrike Gerber, Dirk Roggenbuck, Peter Schierack

Authorship: first

https://doi.org/10.3389/fmicb.2018.01905

Expression and characterization of pancreatic secretory granule membrane major glycoprotein GP2 of animal origin

Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · 2018-01-01

Authors & citation details

Rafał Kolenda

Authorship: first, corresponding

https://doi.org/10.17169/refubium-13827

2017 1

The Novel Type 1 Fimbriae FimH Receptor Calreticulin Plays a Role in Salmonella Host Specificity

Frontiers in Cellular and Infection Microbiology · 2017-07-19

Authors & citation details

Krzysztof Grzymajło, Maciej Ugorski, Jarosław Suchański, Anna Ewa Kedzierska, Rafał Kolenda, Anna Jarząb, Agnieszka Biernatowska, Peter Schierack

Authorship: coauthor

https://doi.org/10.3389/fcimb.2017.00326

2016 1

Expression of metallothionein in the liver and kidneys of the red deer (Cervus elaphus L.) from an industrial metal smelting area of Poland

Ecotoxicology and Environmental Safety · 2016-12-19

Authors & citation details

Maciej Durkalec, Rafał Kolenda, Tomasz B. Owczarek, Agnieszka Nawrocka, Jędrzej Grzegrzółka, Piotr Dzięgiel, Piotr Andrzej Socha, R. Kołacz, Peter Schierack

Authorship: coauthor, corresponding

https://doi.org/10.1016/j.ecoenv.2016.11.018

2015 2

First molecular characterization of Sarcocystis tenella in Tatra chamois (Rupicapra rupicapra tatrica) in Poland

Parasitology Research · 2015-07-22

Authors & citation details

Rafał Kolenda, Peter Schierack, Filip Zięba, Tomasz Zwijacz‐Kozica, Michał Bednarski

Authorship: first, corresponding

https://doi.org/10.1007/s00436-015-4619-4

A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli

Frontiers in Cellular and Infection Microbiology · 2015-03-12

Authors & citation details